PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_267974g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 164aa    MW: 17217.7 Da    PI: 10.9783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_267974g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-083401047
                     HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      l++ +  ++G+g+Wk+I+r +   Rt+ q+ s+ qky
   MA_267974g0010  3 RLFLLGLDKHGKGDWKSISRNFVISRTPTQVASHAQKY 40
                     67888999***************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.173145IPR017930Myb domain
PfamPF002499.2E-7240IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.6E-11243IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.8E-6239IPR009057Homeodomain-like
CDDcd001673.38E-6241No hitNo description
SuperFamilySSF466891.37E-10246IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MERLFLLGLD KHGKGDWKSI SRNFVISRTP TQVASHAQKY FIRMNSANKD RRRSSIHDIT  60
SVNNGDTSIP QGSITGQGNG STGAVGKPAK SLSEPGLPRV VAYGPPVGHP IAVPAGSAVG  120
TPIMIPPGHV PYVSRGSLPG PVVPGTPMNV VPVAYPVSQP TMHQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1239640.0BT123964.1 Picea sitchensis clone WS04719_C07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011624612.14e-63transcription factor SRM1
SwissprotQ9FNN64e-47SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0D6R5A27e-80A0A0D6R5A2_ARACU; Uncharacterized protein
STRINGEOX990475e-60(Theobroma cacao)
STRINGXP_004513249.15e-60(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-49MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]