PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_27968g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 161aa MW: 18783.4 Da PI: 8.7582

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_27968g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.6e-55	6	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk k+++ + evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatg+d++v+ MA_27968g0010 6 LPPGFRFHPTDEELISCYLKGKLNHGLkAAELEVIPEVDLYKCEPWDLPeKsFLPNTDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKVY 101 79******************987763555689**********95334455778*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129 s + +++g+kktLvfy+grap+ge+tdWvmheyrle MA_27968g0010 102 S-RASTTGIKKTLVFYRGRAPQGERTDWVMHEYRLE 136 .8899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-58	3	144	IPR003441	NAC domain
PROSITE profile	PS51005	55.192	6	155	IPR003441	NAC domain
Pfam	PF02365	5.5E-29	7	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MGAFALPPGF RFHPTDEELI SCYLKGKLNH GLKAAELEVI PEVDLYKCEP WDLPEKSFLP 60 NTDMEWYFFS PRDRKYPNGS RTNRATEAGY WKATGRDRKV YSRASTTGIK KTLVFYRGRA 120 PQGERTDWVM HEYRLEENEC EAGPYLQNLP KLMWRRANVG I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-50	6	135	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103829	0.0	BT103829.1 Picea glauca clone GQ02802_M02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021888064.1	2e-77	NAC domain-containing protein 86-like
Refseq	XP_026397542.1	2e-76	NAC domain-containing protein 86-like
Swissprot	A4VCM0	2e-70	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	B8LLW8	6e-99	B8LLW8_PICSI; Uncharacterized protein
STRING	evm.model.supercontig_178.32	7e-77	(Carica papaya)
STRING	MLOC_71128.1	5e-77	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	7e-77	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]