PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_288689g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 293aa    MW: 32169.3 Da    PI: 7.375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_288689g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-1978126355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y GVr++  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+ +l+g
  MA_288689g0010  78 YIGVRRRT-WGKWVSEIREPKK---KSRIWLGSFDTPEMAARAYDVAAFCLKG 126
                     89***877.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1276126IPR001471AP2/ERF domain
SMARTSM003802.2E-3477141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2977136IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2077136IPR016177DNA-binding domain
PROSITE profilePS5103223.03777135IPR001471AP2/ERF domain
PRINTSPR003676.7E-97889IPR001471AP2/ERF domain
CDDcd000189.14E-3178137No hitNo description
PRINTSPR003676.7E-9100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MALCCSRPTA NFRFLCFKTM DNGDSFVPET ILTSSTDTKA ISKSASAAKG GSKRIRTQDE  60
AAPSPSQKSR LKLQNPAYIG VRRRTWGKWV SEIREPKKKS RIWLGSFDTP EMAARAYDVA  120
AFCLKGKKHA LLNFPELIDH LPQPISSSPH HIQAAAAEAA FEFNSASESA RNSARSSDVN  180
KQERRSPRNP PISKECAGTS SSDQLSTVIS SDLKLGRASV ELLGQTNAIN SSSVCPKTEG  240
LGESVIEEDL FESLNLYTNL AEALMLPPPL LFSNPEVEIE EQKLEEGFLW SEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16741361173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1171011e-63FJ117101.1 Pinus taeda isolate 4346 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171031e-63FJ117103.2 Pinus taeda isolate 4361 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171041e-63FJ117104.2 Pinus taeda isolate 4349 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171051e-63FJ117105.2 Pinus taeda isolate 4355 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171061e-63FJ117106.2 Pinus taeda isolate 4347 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171071e-63FJ117107.2 Pinus taeda isolate 4348 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171081e-63FJ117108.2 Pinus taeda isolate 4359 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171121e-63FJ117112.1 Pinus taeda isolate 4345 anonymous locus UMN_6348_01 genomic sequence.
GenBankFJ1171131e-63FJ117113.1 Pinus taeda isolate 4356 anonymous locus UMN_6348_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ67e-97D5ABJ6_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-35ERF family protein