PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_290245g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 224aa MW: 24598.8 Da PI: 7.8732

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_290245g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.2	1.9e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+ +Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql++el+ MA_290245g0010 8 PCAACKFLRRKCTLECVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELHPHQREDAVNSLAYEADARVKDPVYGCVGAISILQHQVKQLQTELH 102 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e MA_290245g0010 103 HARSE 107 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.456	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MASSSNSPCA ACKFLRRKCT LECVFAPYFP PDQPQKFANV HKIFGASNVT KLLNELHPHQ 60 REDAVNSLAY EADARVKDPV YGCVGAISIL QHQVKQLQTE LHHARSELSK YINAGIAIPP 120 MGVAPGIGMG LAGSSRDQIF RDQNIIESHI SRDHILRASN YDQTDIVRLS GPGYDPNYLA 180 ISGSLAQAQA QAQAQVFNPY PRTGSSSDER ACISPPYLHP KREE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-57	4	111	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-57	4	111	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT119542	0.0	BT119542.1 Picea glauca clone GQ04106_O21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024403438.1	3e-70	LOB domain-containing protein 6-like
TrEMBL	A0A443NSI2	2e-73	A0A443NSI2_9MAGN; LOB domain-containing protein 6-like protein
STRING	PP1S170_78V6.1	1e-69	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-59	LBD family protein