PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_29186g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 684aa    MW: 75029.4 Da    PI: 6.7305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_29186g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.91.4e-16457503455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  MA_29186g0010 457 VHNLSERRRRDRINERMRALQKLIPNS-----SKTDKASMLDEAIEYLKHLQ 503
                    6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-20450513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-19453511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.584453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-14457503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-11458507No hitNo description
SMARTSM003532.8E-19459508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MADWCLSTSP NSLTAPKILN IDITXLSGLG PLNMFSFNKS KAWDQEEQRT DLEDQFPPAM  60
PDYEQLAELI WKDGHPAMQD LGSRANRHHN NHKISSSGYW GNDHPASINR RQSQGGEKEV  120
DGTLDAIVEN LPPIDEETAS WFNYTLNELQ EPALGHRKPE KISNSASEPN DPDALVPESN  180
TIVRPEYAFA HSIPMKSELS EPPTSSPSPV PAQPQLQLQS SRDGDSMNFS HFSKPAVIMK  240
SQPHTISRAS GSTMKSQPHT ISRASGSTNS QRARQHNSGV EVPGSNNMPA SIVESSGGLC  300
ANSDESYPSS CRASTLSSKN QPPPLNMVRV YSKPVSTCET NASDHDCITA KAVEDQNRGN  360
NNSMSESATI AKERTVSENY EGVEVTLTST SGGSPNNSMT QKSGKEPCST RCKRKFSGEE  420
DSGCQSEDPD DNESAQAKKP QTGRRSGSSN RSRAAAVHNL SERRRRDRIN ERMRALQKLI  480
PNSSKTDKAS MLDEAIEYLK HLQAQLQMMI LRNGMNIPPM MMPLGMQQLQ MSLLASLGPT  540
GLGMGMTGVG LGMGMGMMDM NSVAAGRVPM APMAQPLPTI GSHAIPGSVH PATFIQPNMT  600
ATGFSTSSDA NDRMGNTSFL DLYRAYIACQ HQSMNMNMNM DFYNSMALQQ QQQQQVKQLQ  660
QQQFDHHQQQ QVKQLQQKQV NNNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461466ERRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1232020.0BT123202.1 Picea sitchensis clone WS04710_B07 unknown mRNA.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-17bHLH family protein