PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_293538g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 228aa    MW: 26583.1 Da    PI: 6.6669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_293538g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-0776119855
                     HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +E+ RR+r++s   +L +llP  +      Kl+     e++++YI++L+
  MA_293538g0010  76 AEQLRRKRMKSLCTQLESLLPAtP-----AKLDRCGLFEETINYIRKLE 119
                     8*********************55.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.48168118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-568120No hitNo description
SuperFamilySSF474595.76E-1069128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1069132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00274124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-576119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MASDCLFSYS FPASRTVYSN VAQCDRQVDC RVTSSRKRPS EVDLADSQDY NDLQEKVWQD  60
VDHMMKFSSK ESQIFAEQLR RKRMKSLCTQ LESLLPATPA KLDRCGLFEE TINYIRKLEE  120
NMSQLKRNRD NLLSIQSGKT ANENIEIKVA VEFYDREAII SITSQRGPRH MWRILEELEN  180
HGLDVETSQF FTGEFFVLVF FHANFRGHIS QDPAQIRTSL ECRLKSTY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0864590.0EF086459.1 Picea sitchensis clone WS02745_D02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-152A9NYK8_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-07bHLH family protein