PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_306658g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 218aa    MW: 23783.6 Da    PI: 7.4961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_306658g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.3e-09122162954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri ++f  L++l+P       +K++ a++L +A++Y+k L
  MA_306658g0010 122 ARHRRHRISKKFKILQTLVPGG-----TKMDTASMLDEAIQYVKFL 162
                     699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13118171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-11119166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.10E-12119166No hitNo description
PfamPF000105.8E-7123162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEYETYDFSL AGLEYSVLNN NDLLYFNNVK FPSEAGGSLN SLLGTPTFLP DVVQSSPMST  60
ESNAVLGSNE ECNAPNSTPD SGCTSGASVS KQEISTASKK KKKTQKGQNT NKLSVDPQSV  120
AARHRRHRIS KKFKILQTLV PGGTKMDTAS MLDEAIQYVK FLKTQIWIHE TMGYGYPLDA  180
NLANGEGFQN FTSISSYCSA PQLVQRNAID YNSGHSGM
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.11e-27APRATAXIN-like