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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MA_30864g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 254aa MW: 28570.6 Da PI: 4.8606 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 54.1 | 3.6e-17 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++++
MA_30864g0010 10 RGNISPDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHM 55
7899******************.*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 1.72E-14 | 1 | 59 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.8E-25 | 1 | 59 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 26.729 | 5 | 59 | IPR017930 | Myb domain |
| SMART | SM00717 | 4.0E-16 | 9 | 57 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 2.5E-15 | 10 | 54 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 1.27E-12 | 14 | 55 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 254 aa Download sequence Send to blast |
MNYLRPDIKR GNISPDEEEL IIRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNTHMSKKLC 60 LSVNESQPKT SQNLRKRSKS PVPVRNRVFR ATAVKIKTAV RHSEMVGANG YNADGSGNGI 120 SDEAFKLPDV KEARKFSWLD LLVNDSIGDE ESDCIALAMA DNPVETAGTN SISSMSPLAD 180 QQSPHYDHSA GDAATLAESL LYLNEQSSPD CNLLHSPSEC STDFASEEFY RGMEEFYDNA 240 EHEDWIHEFD YSEK |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 7e-13 | 2 | 59 | 51 | 108 | B-MYB |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | B8LMJ6 | 1e-111 | B8LMJ6_PICSI; Uncharacterized protein | ||||
| STRING | XP_008233115.1 | 2e-32 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP5 | 17 | 1784 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G09460.1 | 6e-23 | myb domain protein 6 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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