PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_3158g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 165aa MW: 18934.1 Da PI: 10.2185

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_3158g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.1	9.4e-11	8	50	11	53
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ ++F++n ps + + L+k+l+L+ rqV +WF+N R+ MA_3158g0010 8 AVQKFRQVFAENELPSMSCKMALSKQLDLPYRQVHMWFKNARY 50 5677889***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.677	1	55	IPR001356	Homeobox domain
SMART	SM00389	3.4E-4	2	59	IPR001356	Homeobox domain
CDD	cd00086	1.28E-6	2	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-11	3	64	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.42E-10	4	64	IPR009057	Homeodomain-like
Pfam	PF00046	3.5E-8	8	50	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MSRLPANAVQ KFRQVFAENE LPSMSCKMAL SKQLDLPYRQ VHMWFKNARY MSLKKKKMNR 60 SKESAPIISS HTRRLKVESS KPTPQIKEQD DAGNSYLTEM EKLGNIELKL ESLRKILETI 120 CPKEGNNFSI GKNQEGIANL LSEELLVYVP VVELREKSLQ VAPVR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1830	15	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	9e-16	pathogenesis related homeodomain protein A