PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_320104g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 121aa    MW: 14183.8 Da    PI: 8.8166
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_320104g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-115293447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     WT+eE e++  a k++G++ +++Ia+ +g +R   q++ + qky
   MA_320104g0010 52 WTKEEREKFHVALKMFGTD-FEAIAEFVG-TRNSTQVRTHAQKY 93
                     *******************.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3834798IPR017884SANT domain
Gene3DG3DSA:1.10.10.602.6E-64796IPR009057Homeodomain-like
SuperFamilySSF466891.5E-124897IPR009057Homeodomain-like
SMARTSM007172.8E-94896IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-75096IPR006447Myb domain, plants
CDDcd001671.97E-85293No hitNo description
PfamPF002497.5E-105293IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MQADFSGFED FKYFQNEIFH PTEQIEIMKA QDEQGEVPLP VETKKVSENR YWTKEEREKF  60
HVALKMFGTD FEAIAEFVGT RNSTQVRTHA QKYYAKMVRD YKKNGKASQT QNKGQKSSSN  120
N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380186.16e-36myb-like protein I
TrEMBLA0A2K1KBB11e-34A0A2K1KBB1_PHYPA; Uncharacterized protein
STRINGPP1S80_153V6.11e-35(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1164447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.12e-12MYB_related family protein