PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_336002g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 107aa    MW: 11955.6 Da    PI: 6.0806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_336002g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.8e-075794544
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +++E++l+ +++++lG + W++Ia +++  R  +++ ++ 
   MA_336002g0010 57 SADEEDLINRLHNLLGDR-WALIAGRLP-WRRVEEIENYC 94
                     789*************99.*********.*****999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-452100IPR001005SANT/Myb domain
SuperFamilySSF466895.65E-55694IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-85793IPR009057Homeodomain-like
PfamPF002492.1E-65795IPR001005SANT/Myb domain
CDDcd001676.83E-55796No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MIILIHIYLS MEDSKQHFSP PKAEGDCNVT PGGGLISLCG SSVEYCQKSA CAAHDISADE  60
EDLINRLHNL LGDRWALIAG RLPWRRVEEI ENYCKMRYTP STSSSRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1093621e-172BT109362.1 Picea glauca clone GQ03207_J20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQX01e-18A9NQX0_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3921825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.19e-14MYB family protein