PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_33661g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRF
Protein Properties Length: 591aa    MW: 63661.1 Da    PI: 8.4945
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_33661g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.61.4e-25266310145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e 
  MA_33661g0010 266 DPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRHRSRKPVEG 310
                    79****************************************985 PP
2QLQ62.31.3e-21200235237
            QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                    +FT +Q+q+L++Q+l++Ky++a++PvPp+L+ +i+k
  MA_33661g0010 200 PFTQSQWQELEHQALIFKYMMAGVPVPPDLIIPIRK 235
                    9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.9E-13199235IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-16200234IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.568200235IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.898266310IPR014977WRC domain
PfamPF088799.4E-22267309IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MDFSHSSVSV SGSLSELGDH RHSRMPGLSS PTGIGIGMLS HVSVGDPYNK QCRPASEMDL  60
DERSRGPIKI ARTDSFSCRQ QQHHNSNGNN NSAAAIGSLL RSNSIMSDGR LTNCSPTNSS  120
ASDGGGLITN EGCVNVSEQR LMRCDSVVSA YGGGGGARTL SFHQSYNCNK PAGLPLGMSR  180
ENGASHMGGM HGIIAGTRPP FTQSQWQELE HQALIFKYMM AGVPVPPDLI IPIRKSVAAL  240
SVALSAGSYH PMAWNSFQLG FPSNTDPEPG RCRRTDGKKW RCSRDVVPDQ KYCERHMHRG  300
RHRSRKPVEG QTAAPNSQSQ LGGPTPTITT TTTTNTNTSN GPSPSSISLA AVRNTNIHTS  360
NLRPPVTVNS HHQQQQSPLG MSSNLFQIAS GSASSMGSDK EYRYMNGMKG GDIDEQVFFS  420
DVSGSTRGLG QDSILSSVNN NGWRSSMTSK VSQVKTEQNG SFMQYNSPQV RTLLGQDFSL  480
MSDASQQMQH QHSFRNSGFG VVESGNVGRE SEGQGQPLRH FFDDWPRSRD ASTLSWSDVE  540
EDRSNRSSST TQLSISIPMA SSDFSATNSS SPREREVGGG AGRVDTTKSS D
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7110530.0KJ711053.1 Pinus tabuliformis clone PtGRF3 GRF3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400508.11e-137growth-regulating factor 4-like isoform X2
RefseqXP_024400509.11e-138growth-regulating factor 4-like isoform X3
TrEMBLA0A0K0M7160.0A0A0K0M716_PINTB; GRF3
STRINGPP1S344_39V6.11e-137(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-43growth-regulating factor 5