PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_34924g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 401aa MW: 45495.4 Da PI: 8.4532

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_34924g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.5	4e-09	37	114	2	84
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 W++ + +L+ +++ +++rg+l k++W ++++++ + + s +qCk kw+ l+k y k k + + s+++y+++ MA_34924g0010 37 WPNTSIDVLLLKFEDTCFSVSRGRLGKTHWGRIADAVNAVCSaNYSGVQCKYKWNRLKKSYNKAKLHGET------SRFVYYKR 114 99999999999999*********************88776377****************9876554......24556655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-9	39	117	No hit	No description
PRINTS	PR01911	5.9E-16	266	283	IPR020428	Protein-tyrosine phosphatase SIW14-like, eukaryotic
Gene3D	G3DSA:3.90.190.10	1.4E-8	266	331	IPR029021	Protein-tyrosine phosphatase-like
SuperFamily	SSF52799	4.32E-12	266	336	IPR029021	Protein-tyrosine phosphatase-like
Pfam	PF03162	1.8E-20	267	334	IPR004861	Protein-tyrosine phosphatase, SIW14-like
PRINTS	PR01911	5.9E-16	303	316	IPR020428	Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTS	PR01911	5.9E-16	322	336	IPR020428	Protein-tyrosine phosphatase SIW14-like, eukaryotic

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0004725	Molecular Function	protein tyrosine phosphatase activity

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MASPSIQFQN PNENRPALAL KRIETTKSSR AQKEALWPNT SIDVLLLKFE DTCFSVSRGR 60 LGKTHWGRIA DAVNAVCSAN YSGVQCKYKW NRLKKSYNKA KLHGETSRFV YYKRVERIVQ 120 KASGEKLHED EEEEEEEEEE EMASEDDGVD SICEAASIES KPSSASMSAT EDDDVHRRPQ 180 KRGVTLKSFG DKMEQSMNNL AQSMKNIEKT RTDKMMKLLD AQLEITSMLV QNNKRLKPSD 240 GVAAGRAWAM NEAGLMCQQQ GRVSSFVPPL NFAMVDKGVY RSGFPNHANF PFLKTLKLRS 300 IIYLCPEPYS EVNMKFLRAE EIQIFQFGII GYKGWEESAT AVVEIVEGPR RRQPSDRKDA 360 WRADRDSANS TFDILQASCV REERNAEARS PKHLGRFRPG S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MASPSIQFQN PNENRPALAL KRIETTKSSR AQKEALWPNT SIDVLLLKFE DTCFSVSRGR  60
LGKTHWGRIA DAVNAVCSAN YSGVQCKYKW NRLKKSYNKA KLHGETSRFV YYKRVERIVQ  120
KASGEKLHED EEEEEEEEEE EMASEDDGVD SICEAASIES KPSSASMSAT EDDDVHRRPQ  180
KRGVTLKSFG DKMEQSMNNL AQSMKNIEKT RTDKMMKLLD AQLEITSMLV QNNKRLKPSD  240
GVAAGRAWAM NEAGLMCQQQ GRVSSFVPPL NFAMVDKGVY RSGFPNHANF PFLKTLKLRS  300
IIYLCPEPYS EVNMKFLRAE EIQIFQFGII GYKGWEESAT AVVEIVEGPR RRQPSDRKDA  360
WRADRDSANS TFDILQASCV REERNAEARS PKHLGRFRPG S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1xri_A	6e-26	267	333	3	69	At1g05000
1xri_B	6e-26	267	333	3	69	At1g05000
2q47_A	6e-26	267	333	3	69	Probable tyrosine-protein phosphatase At1g05000
2q47_B	6e-26	267	333	3	69	Probable tyrosine-protein phosphatase At1g05000
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF677546	0.0	EF677546.1 Picea sitchensis clone WS02770_G18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LNY6	0.0	B8LNY6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-07	Trihelix family protein