PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_37369g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TCP
Protein Properties Length: 715aa    MW: 79110.8 Da    PI: 8.7526
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_37369g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.25e-372504402137
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................................ 65 
                     g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGfd++sk++eWL+++a  ai+el+ +                                
  MA_37369g0010 250 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAVEWLIKAAADAIDELPVLnthdfqsaishsspslhphppsnsnlgdneaa 345
                    579*************************************************************99999988887777777666666666555555 PP

            TCP  66 .....ssssaseceaesssssasnsssg......................................kaaksaakskksqksaasalnlak.esrak 117
                         s                     +                                       +++s++++ ++ ++  s l+l++ esr k
  MA_37369g0010 346 tlnvfS---------------------EspsihgmssandsqssregaltnegqceiqaaartvllGKSSSSTSEGSRGADIYSGLSLSRsESRVK 420
                    544441.....................022222333333333334456666778899999999**98888888888888999999****99***** PP

            TCP 118 arararertrekmriknkln 137
                    ar+ra+er + k + ++ ++
  MA_37369g0010 421 ARERAKERAKGKISANDTQQ 440
                    *********99988876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-36251432IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615252310IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.381415432IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MVGVANFLVE FSAEPTAQEG VQNHHHRTRR IVWKDYNYSF VPQRFPNLGR WKKKLNAQLS  60
PVVIDCGSLI YNECAENFIA MRVRLYGHYI RHCCSGSRRG EGANCRAYGL QKQEYIQKGA  120
FSTIKRLXGS ELGLAGLDFD FKTAVHSESI ESQQKTEKGL DYSLVTLQSN LLIRSEREGE  180
LQGSRKVADE SRMNNIDVEA QKRKVDQELL ERTRAQSQHI SIRGSDAGAQ FRLRPGLGHD  240
SRIVRVSRSS GGKDRHSKVL TAKGLRDRRV RLSVSTAIQF YDLQDRLGFD QPSKAVEWLI  300
KAAADAIDEL PVLNTHDFQS AISHSSPSLH PHPPSNSNLG DNEAATLNVF SESPSIHGMS  360
SANDSQSSRE GALTNEGQCE IQAAARTVLL GKSSSSTSEG SRGADIYSGL SLSRSESRVK  420
ARERAKERAK GKISANDTQQ NQNKDSKGGA CHSFTGLLKN AGHVNALENH SRSTTDDDDA  480
VLLHKRQRLG GLSIGSRSNA MQHEISHDSH THHHHPAHVH ENDSFHDPQQ LPHMGSLGLC  540
STLMHLAPSV QSFSFPNSVA AAIFSPISLQ RNEMAKSISP LCTSQDQQKH LPGNIAAFAS  600
NPGLHNNSFL LTVDQGELQE QLQVPTITND HMINFSVPGL SARETLQSNS YNMNYMPLHH  660
MQRIQPTHQA TAIDNSHLQG FDTARMMERP NQDFGIQGAR NSASKGNKKN EHQYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-24257311155Putative transcription factor PCF6
5zkt_B2e-24257311155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1113150.0BT111315.1 Picea glauca clone GQ03235_P07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7C80.0A0A0K0M7C8_PINTB; TCP1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-32TCP family protein