PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_3834g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 428aa    MW: 47944.1 Da    PI: 9.5954
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_3834g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.71.7e-31135224186
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                   f+k++tpsdv+k++rlv+pk++ae++     ++ke++  l +ed+sg++W+++++y+++s++yvltkGW++Fvk+ +L++gD+v F++  
  MA_3834g0010 135 FEKAMTPSDVGKLNRLVIPKQHAEKYlpmdTEEKEKGLFLNFEDSSGKKWRFRYSYWNSSQSYVLTKGWSRFVKEMKLDTGDIVSFHRAT 224
                   99**************************99667788899************************************************542 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-4256IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-6548IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-39125239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-29134234IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-27134222No hitNo description
SMARTSM010199.3E-23135236IPR003340B3 DNA binding domain
PfamPF023621.3E-28135227IPR003340B3 DNA binding domain
PROSITE profilePS5086314.311135239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVPEPNERWG AQICEKRQRV WLGTFNGQYE TAKAIAAFKL AGRDAITELK PRLEVGHLET  60
RSLSVDSKGN IVDMLISKHT YKEKRGYSKN NDRPLCSETD QEEEVQNFEG RAKNYNPGGG  120
EDDKKASSWP REGLFEKAMT PSDVGKLNRL VIPKQHAEKY LPMDTEEKEK GLFLNFEDSS  180
GKKWRFRYSY WNSSQSYVLT KGWSRFVKEM KLDTGDIVSF HRATHQDPNL QRLFISCRRK  240
PCSAAQPPGL PDSIIRSLQM SSPAINNIAG SHGQQLVTSG ALIGQQWTPL SWPASNVIGS  300
PSAPETGTLQ TNAKPMDVLT SLHFIKTDDK PGKRKGIHDS GFPFSIQRSS NTTECGRYAV  360
DTKSWLKAPP LRAMHLKAPG SFPDDLSAAT RFDHSTSAST SKKVVRLFGV NLEFGEFNGN  420
YKDELLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-501312414114B3 domain-containing transcription factor NGA1
5os9_B5e-501312414114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026407817.11e-72AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotP822801e-66RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A0D6QRH41e-71A0A0D6QRH4_ARACU; Uncharacterized protein
STRINGXP_009796840.13e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-69related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]