PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_38676g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 371aa MW: 42456.5 Da PI: 7.3018

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_38676g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	18	73	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e+Le+ +++++yp+++++++L+++lgL+e+qV+ WF rR k+kk MA_38676g0010 18 QKRRLKTPSQVEALENIYAEHKYPTESMKAKLSRELGLSEKQVQRWFRHRRLKDKK 73 589999************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.277	14	74	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.39E-17	17	76	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-17	17	78	IPR001356	Homeobox domain
CDD	cd00086	2.27E-17	18	75	No hit	No description
Pfam	PF00046	9.9E-16	18	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-18	19	73	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MIEVFDLGFM EDKGFVEQKR RLKTPSQVEA LENIYAEHKY PTESMKAKLS RELGLSEKQV 60 QRWFRHRRLK DKKGKKEDPD SNEELDAGSG SNLQQQQHVV RTELGRSEKR RLLGISDYPS 120 AVLAAELTDH DMLKRNHRVM EEDPHHAGNV STSQDTSSLQ SRSSYEMDAL RNGNYVEMKG 180 SNSKKRKGQV MHMGMEHTYP QHFSVATEEQ YIARGLKQAG GSNSKQAKNW NRLTAKDGEN 240 HRFVNNHDYP SAVLAAELTD RELLKGNHDI VEDPYVSLSQ ERSSLQSGSS YEMEARRLPS 300 KSLNSFEIEA RSKRREKEGL HMVVEPLYWQ QAVEHQAISA VKVQLGRLFQ EDGPMLGVEF 360 DPLPPDAFGY R

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MIEVFDLGFM EDKGFVEQKR RLKTPSQVEA LENIYAEHKY PTESMKAKLS RELGLSEKQV  60
QRWFRHRRLK DKKGKKEDPD SNEELDAGSG SNLQQQQHVV RTELGRSEKR RLLGISDYPS  120
AVLAAELTDH DMLKRNHRVM EEDPHHAGNV STSQDTSSLQ SRSSYEMDAL RNGNYVEMKG  180
SNSKKRKGQV MHMGMEHTYP QHFSVATEEQ YIARGLKQAG GSNSKQAKNW NRLTAKDGEN  240
HRFVNNHDYP SAVLAAELTD RELLKGNHDI VEDPYVSLSQ ERSSLQSGSS YEMEARRLPS  300
KSLNSFEIEA RSKRREKEGL HMVVEPLYWQ QAVEHQAISA VKVQLGRLFQ EDGPMLGVEF  360
DPLPPDAFGY R

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT123558	0.0	BT123558.1 Picea sitchensis clone WS04714_L06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5ABF4	0.0	D5ABF4_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8823	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	6e-21	HB-other family protein