PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_38970g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ZF-HD

Protein Properties

Length: 122aa MW: 12785.2 Da PI: 6.0897

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_38970g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.2	1.3e-30	27	81	2	57
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 e+vrY+eC+kNhAas+Gg+avDGC Ef++s g+egta+a+kCaAC+CHR+FHRrev MA_38970g0010 27 EGVRYRECRKNHAASTGGYAVDGCAEFIAS-GDEGTAEAMKCAACNCHRSFHRREV 81 579************************9.999******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.4E-29	29	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-19	29	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.7E-26	30	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.749	31	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MGPSEIVQQI EEGAAAIVRE GDAASREGVR YRECRKNHAA STGGYAVDGC AEFIASGDEG 60 TAEAMKCAAC NCHRSFHRRE VGNGTLCECH TAASIGGKLE TGPYASVIAY AGDNPPFRSM 120 AK

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104864	1e-144	BT104864.1 Picea glauca clone GQ02815_P23 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931461.2	2e-29	mini zinc finger protein 2
Swissprot	Q9LJW5	2e-24	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A9NK89	8e-56	A9NK89_PICSI; Uncharacterized protein
STRING	XP_008792497.1	3e-29	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	8e-27	mini zinc finger 2

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]