PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_3905g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 251aa MW: 26843.8 Da PI: 4.4005

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_3905g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	225	245	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C++ F + s L++H MA_3905g0020 225 HVCNTCSRNFATESALTQHNA 245 79*****************66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.907	225	251	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	227	248	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGGYEDSDSD SDDDRQAQAL MRRVKENGQK EARLAKPELM KDGVKQLKPE SVLIDKAAAK 60 AKPGERKSLP GKKPEEKEES SEDDDEEDDD DDDDVDDDDD EDDEGMEGSS DDEDESDEEE 120 GDSDDESDED KNRKMPKVES SGKKRPLPDS SIKSPGTDKK AKVTPGGAQN QGTDGGKKGG 180 PKISVSKEQI PSNKGQTPKA KGGVGAKESP KPSTTPGSGK KIGQHVCNTC SRNFATESAL 240 TQHNAAKHGG K

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT119477	0.0	BT119477.1 Picea glauca clone GQ04106_D18 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9P2L8	1e-122	A9P2L8_PICSI; Uncharacterized protein