PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_3951g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HD-ZIP
Protein Properties Length: 361aa    MW: 40717.7 Da    PI: 6.4049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_3951g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.7e-1993146356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   k++++t eq+++Le+ Fe  ++++ e++ +LAk lgL +rq++vWFqNrRa++k
  MA_3951g0010  93 KKRRLTIEQVKTLEKSFELRNKLDPEKKMQLAKALGLHQRQISVWFQNRRARWK 146
                   45689************************************************9 PP
2HD-ZIP_I/II110.61.1e-3592184193
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   ekkrrl+ eqvk+LE+sFe ++kL+pe+K++la++Lgl++rq+ vWFqnrRAR+ktkq+Ek++++Lk++y++l+++ + L +++++ ++e+++
  MA_3951g0010  92 EKKRRLTIEQVKTLEKSFELRNKLDPEKKMQLAKALGLHQRQISVWFQNRRARWKTKQMEKNFAVLKHEYETLRRNYDILFQKNRQFKAEVQR 184
                   69************************************************************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1977150IPR009057Homeodomain-like
PROSITE profilePS5007117.03888148IPR001356Homeobox domain
SMARTSM003894.7E-1991152IPR001356Homeobox domain
CDDcd000864.31E-1793149No hitNo description
PfamPF000464.6E-1693146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1995153IPR009057Homeodomain-like
PRINTSPR000311.2E-5119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5128144IPR000047Helix-turn-helix motif
PfamPF021833.4E-9148189IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MFWDKDTASD CRPFRCSNSA MITEYQSAKA MDDIIASCTS VGLQGAGSLT RNGCENTRKR  60
SMSSTSYSGA MNLSEHDIGE EDGSDDCPHF GEKKRRLTIE QVKTLEKSFE LRNKLDPEKK  120
MQLAKALGLH QRQISVWFQN RRARWKTKQM EKNFAVLKHE YETLRRNYDI LFQKNRQFKA  180
EVQRLSRELK DNDRSSKVSI SEIESQKNPA NSVPKITDSP MELSVKSEIC INFTEQPKHN  240
YPTTTNEQDG GCCSYMTESA SSIFNMDSPR TIESPQSPGI PQMASASANR SSPVLVVEGS  300
SVGGEVAASV QKTPPPGLHE WHCLPKVEVD QSTEESWCNL LYSLEEQGAL MLCEYWRVPD  360
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARWKTKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0835450.0EF083545.1 Picea sitchensis clone WS02723_I06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQH80.0A9NQH8_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-41HD-ZIP family protein