PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_39832g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LBD
Protein Properties Length: 198aa    MW: 21692.6 Da    PI: 5.0205
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_39832g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.73.3e-3713111199
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    +C++Ck++++kC++ Cvlapyfp+++p+kf  vh++FG+ +v+kll+ lp e+r da+ss+vyeA  r+rdPv+G++gvi++lq++l++l+ ++++
  MA_39832g0010  13 SCSGCKIQKKKCSDYCVLAPYFPQNDPQKFLLVHRVFGNGHVIKLLQGLPAEKRGDAVSSMVYEASERVRDPVHGCAGVIKDLQSKLAELQLQMES 108
                    6******************************************************************************************99998 PP

         DUF260  97 lke 99 
                    ++ 
  MA_39832g0010 109 TQV 111
                    875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.51812113IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-3613110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSDTSAWKQE TASCSGCKIQ KKKCSDYCVL APYFPQNDPQ KFLLVHRVFG NGHVIKLLQG  60
LPAEKRGDAV SSMVYEASER VRDPVHGCAG VIKDLQSKLA ELQLQMESTQ VEIANISLQI  120
GNLLTLFTGY QQGLYPDFYT AALEDVEDTI TNPNALDDVD PLQLCSYGNH SGATALCKRK  180
GIKTDGILEN VTTMSSVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-321211310111LOB family transfactor Ramosa2.1
5ly0_B8e-321211310111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI92e-68B8LQI9_PICSI; Uncharacterized protein
STRINGCagra.1671s0410.1.p2e-43(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-47LOB domain-containing protein 1