PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_407206g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family YABBY
Protein Properties Length: 182aa    MW: 19678.1 Da    PI: 7.2858
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_407206g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY178.83.1e-55111657163
           YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101
                     ++++Cy+qCn+C+t+lav+vP +sl+++v vrCGhCtsllsvn+    q  + ++ +++s++e+       ++en +   ++ +s ++sv s   
  MA_407206g0010  11 AGHLCYIQCNYCSTVLAVNVPGSSLLEIVPVRCGHCTSLLSVNMGGLFQSSTPQE-VEQSFNENNYSPSCPSQENKSCSPSSPKSRENSVISGA- 103
                     689****************************************999888766665.67777776655555555544444433333333333322. PP

           YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                     ++++ + ++         ekrqr+Psaynrfi+ eiqrika nP+ishreafsaaaknWah+
  MA_407206g0010 104 ESETVKPISTGLIDCGTTEKRQRAPSAYNRFIRAEIQRIKAVNPEISHREAFSAAAKNWAHL 165
                     333344444444456789*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.4E-5612165IPR006780YABBY protein
SuperFamilySSF470951.11E-6121165IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.4E-4122165IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSSCIDLGIG AGHLCYIQCN YCSTVLAVNV PGSSLLEIVP VRCGHCTSLL SVNMGGLFQS  60
STPQEVEQSF NENNYSPSCP SQENKSCSPS SPKSRENSVI SGAESETVKP ISTGLIDCGT  120
TEKRQRAPSA YNRFIRAEIQ RIKAVNPEIS HREAFSAAAK NWAHLGLMLP DNNKRTNANI  180
DQ
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1238110.0BT123811.1 Picea sitchensis clone WS04717_J07 unknown mRNA.
GenBankBT1244630.0BT124463.1 Picea sitchensis clone WS0474_F24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022933458.15e-49axial regulator YABBY 5-like
RefseqXP_023529551.15e-49axial regulator YABBY 5-like
SwissprotQ10FZ74e-42YAB2_ORYSJ; Protein YABBY 2
SwissprotQ8GW463e-42YAB5_ARATH; Axial regulator YABBY 5
TrEMBLD5AC401e-130D5AC40_PICSI; Uncharacterized protein
STRINGXP_009364015.15e-47(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-44YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]