PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_413315g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 134aa    MW: 14559 Da    PI: 5.6055
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_413315g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.4e-092063344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT +  +l+ +a + + ++   +W+ +a+++g g++ +++k ++
   MA_413315g0010 20 NWTSQQNKLFERALAIYDKDtpdRWHNVASMVG-GKSSEEVKRHY 63
                     8********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.131671IPR017884SANT domain
SMARTSM007177.6E-91769IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-41969IPR009057Homeodomain-like
CDDcd001672.28E-72067No hitNo description
PfamPF002495.7E-72063IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-122074IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDGQSVSLSG RHSSTNTATN WTSQQNKLFE RALAIYDKDT PDRWHNVASM VGGKSSEEVK  60
RHYEILLEDL SCIEAGLVPF PDYKSSGSKS GDSSGGGAIL NNSSGDSSGG GAILNNSDKW  120
AEEEHRRFMC MKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-3021871177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1099332e-60BT109933.1 Picea glauca clone GQ03213_O06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021680636.15e-37protein RADIALIS-like 3
SwissprotQ1A1737e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD5ADC11e-38D5ADC1_PICSI; Uncharacterized protein
STRINGXP_010254802.13e-35(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-33RAD-like 6