PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_42637g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 184aa    MW: 21067.5 Da    PI: 9.0035
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_42637g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-18970157
                   TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   rr+ +++++eq+  Le+++ +  + p+a+++e+++++l    ++++r+V++WFqN++a+ ++
  MA_42637g0010  9 RRTGWNPSTEQIALLEAMYSEgMNSPKAHQIEQITSRLrmygNIKKRNVYYWFQNHKARIRR 70
                   6888****************99*************************************997 PP
2Wus_type_Homeobox956.3e-311072365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       rt W+P++eQi +Le++y++G+ +P++++i++it++L+ yG+i+++NV+yWFQN+kaR r++q
      MA_42637g0010 10 RTGWNPSTEQIALLEAMYSEGMNSPKAHQIEQITSRLRMYGNIKKRNVYYWFQNHKARIRRRQ 72
                       678*********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.499671IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-9776IPR009057Homeodomain-like
SMARTSM003891.7E-8875IPR001356Homeobox domain
SuperFamilySSF466896.42E-12876IPR009057Homeodomain-like
CDDcd000869.95E-7972No hitNo description
PfamPF000461.4E-15970IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAEGQSIRRR TGWNPSTEQI ALLEAMYSEG MNSPKAHQIE QITSRLRMYG NIKKRNVYYW  60
FQNHKARIRR RQKLERVASI NQFHQPHSSA GTSLTDGISQ VQQQSAVVMP ERQVTADDNE  120
PPTLELFPLH PTGIAEYKSE PVNSLGLQRS VCNTDENIDE ENNARSGRGH SHNFFYFIPQ  180
NPGM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ14FJ64e-66Q14FJ6_PICAB; Homeodomain transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP85821116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.19e-27WUSCHEL related homeobox 2