PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_426605g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 235aa MW: 26596.7 Da PI: 7.0455

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_426605g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	36.1	1.3e-11	195	226	1	29
---SS-EEEEEEE--TT-SS-E...EEEEE-S CS WRKY 1 ldDgynWrKYGqKevkgsefpr...sYYrCts 29 ldDgy+WrKYGqK+vk+s +pr +Y Ct+ MA_426605g0010 195 LDDGYKWRKYGQKVVKNSLHPRymnKYSECTY 226 59*******************95555777886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.3E-13	180	225	IPR003657	WRKY domain
SuperFamily	SSF118290	1.07E-10	187	226	IPR003657	WRKY domain
PROSITE profile	PS50811	12.771	190	216	IPR003657	WRKY domain
SMART	SM00774	9.1E-5	195	235	IPR003657	WRKY domain
Pfam	PF03106	1.2E-7	196	222	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MMPSRETRHG VMDEANPRSS GCMQTAALTT FMEQQPMRVF QQLQLNAFPS YQLPSNEVLP 60 TMAQLEPPRG FISRADHHLN HSVSSCFDEK DDQFLMDEGS HLEAGGGYTH DDAQYTSLPG 120 CGLITSSSTQ PSNYSHHNFP GCTHQSASNT GDISPAARWE GSNSWPGSEK VKVKVKRKLR 180 EPRFCFQTRS DVDVLDDGYK WRKYGQKVVK NSLHPRYMNK YSECTYIESF ILFNA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	179	KVKRKLR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT117324	0.0	BT117324.1 Picea glauca clone GQ03817_C13 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	1e-24	WRKY family protein