PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_43733g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family E2F/DP
Protein Properties Length: 255aa    MW: 28793.7 Da    PI: 9.2934
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_43733g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.33.1e-1910682871
        E2F_TDP 28 nevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                    +va+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k ek+eirwkg
  MA_43733g0010 10 YKVASELVAEfvnpnsthfsqdqqqfDEKNIRRRVYDALNVLMAMDIISK-EKKEIRWKG 68
                   589***********************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013729.6E-8168IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.04E-14569IPR011991Winged helix-turn-helix DNA-binding domain
PIRSFPIRSF0094046.5E-908252IPR015648Transcription factor DP
PfamPF023191.0E-15968IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.7E-281073IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.13E-4073176IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.75E-4175194No hitNo description
SMARTSM011382.7E-5675251IPR014889Transcription factor DP, C-terminal
PfamPF087812.9E-4076192IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MASTPTMVVY KVASELVAEF VNPNSTHFSQ DQQQFDEKNI RRRVYDALNV LMAMDIISKE  60
KKEIRWKGLP TTNLSDIEQL KTERKRLTSR IDKKRAYLQE LKEQITGLQN LVRRNERVYG  120
SGNNPSGGVT LPFILVKTRP QATVDIEISE DMQLVHFDFN STPFELHDDA FVLKAMRFCK  180
TPDSSGPVDE KPGNESAFTK KYSVLSTMHK GTSSPHSTRT SDTDSYSLSS IPGKICSSSP  240
DPGIIKARIK NENFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2112713491PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111170.0BT111117.1 Picea glauca clone GQ03232_N19 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068073.11e-101transcription factor-like protein DPB isoform X1
RefseqXP_027068074.11e-101transcription factor-like protein DPB isoform X2
RefseqXP_027123244.11e-101transcription factor-like protein DPB isoform X1
RefseqXP_027123245.11e-101transcription factor-like protein DPB isoform X2
RefseqXP_027173114.11e-101transcription factor-like protein DPB isoform X1
RefseqXP_027173115.11e-101transcription factor-like protein DPB isoform X2
RefseqXP_027173131.11e-101transcription factor-like protein DPB isoform X1
RefseqXP_027173132.11e-101transcription factor-like protein DPB isoform X2
SwissprotQ9FNY22e-90DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD5ABL11e-104D5ABL1_PICSI; Uncharacterized protein
STRINGXP_010241817.12e-99(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.25e-93Transcription factor DP