PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_4395g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 211aa MW: 23759.1 Da PI: 8.4544

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_4395g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.9	3.2e-07	66	113	7	35
HHHHHHHHHHHHHHHHHHCTSCC.C.....................TT CS HLH 7 erErrRRdriNsafeeLrellPk.as..................kaps 35 Er+RR+++N+ + +Lr+++Pk + ++++ MA_4395g0010 66 HTERKRRKKLNDTLYTLRSVVPKiSKtmnpltnancalgkrsieSGDK 113 57*********************5547777777777666666664444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-6	63	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.3E-5	66	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-6	67	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDTRLQYAGE IFKSDYYEDQ NNKLWLDNMD EIAGQLDWDD SDPEIIGGSK PATKTNYLQA 60 ASKNLHTERK RRKKLNDTLY TLRSVVPKIS KTMNPLTNAN CALGKRSIES GDKKKSVDKL 120 KHGKVLQVEI CNAGEGGIYH VRIEGKKETG GLVKLTRALE SLPLQIMNSN ICCFDEAIHY 180 SLTVNVKSLG NVGTDKLEDM IRKTTTRDCF E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	74	ERKRRKKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF678571	0.0	EF678571.1 Picea sitchensis clone WS02928_G24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LRN6	1e-146	B8LRN6_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP557	16	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.2	9e-12	bHLH family protein