PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_439607g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 209aa    MW: 23564.9 Da    PI: 8.4661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_439607g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-131456754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      ErrRR+++N+ + +Lr l+P+ +      K++Ka+iL  A+eY+++L
  MA_439607g0010 14 VSERRRRQKMNKLLYTLRALVPNiS------KMDKASILGDAIEYVNEL 56
                    57*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.80E-13561No hitNo description
SuperFamilySSF474595.76E-18671IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.571756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-171370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-161362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-101456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLRYKKPKLS KNVVSERRRR QKMNKLLYTL RALVPNISKM DKASILGDAI EYVNELKQQV  60
ERAECDVQST NVSSQSAEAP VDETNSLGLR LDAANRYGSD RKYHVQVETR VLGESIAELR  120
IRCKKECGIL FHLTRALESL PFQLKNVSFT TLDDYLLLLN VVLQAEAESE CFPATGDCGV  180
RQSIEDSFGK QGLILTSGNS NGHSWQELK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-161266963Transcription factor MYC2
5gnj_B1e-161266963Transcription factor MYC2
5gnj_E1e-161266963Transcription factor MYC2
5gnj_F1e-161266963Transcription factor MYC2
5gnj_G1e-161266963Transcription factor MYC2
5gnj_I1e-161266963Transcription factor MYC2
5gnj_M1e-161266963Transcription factor MYC2
5gnj_N1e-161266963Transcription factor MYC2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1094270.0BT109427.1 Picea glauca clone GQ03208_E14 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.17e-23bHLH family protein