PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_441783g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24077.1 Da PI: 7.6908

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_441783g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.1	6.3e-08	37	79	4	46
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkv 46 +++t eq ++Le+ Fe + + a +++eLA lgL rq+ + MA_441783g0010 37 SRRLTMEQARALEKSFELGKILEAGRKKELAGALGLHPRQIAI 79 3489*************************************87 PP
2	HD-ZIP_I/II	80.1	3.5e-26	36	123	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k rrl+ eq+++LE+sFe + Le rK+ela +Lgl+prq+a+ RA++kt qlEkd+ aLk++y++lk++ ++L +e+++L+ e+++ MA_441783g0010 36 KSRRLTMEQARALEKSFELGKILEAGRKKELAGALGLHPRQIAI----XRAKWKTTQLEKDFGALKQNYESLKARYHTLLEENKKLQPEIQR 123 88***************************************9....6************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.27E-10	21	89	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-8	24	86	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-4	34	91	IPR001356	Homeobox domain
CDD	cd00086	4.05E-6	35	88	No hit	No description
Pfam	PF00046	3.0E-5	37	79	IPR001356	Homeobox domain
Pfam	PF02183	8.2E-14	88	128	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEKVVNSYSA FGISTAGESL EISSSGNVHN PHGMKKSRRL TMEQARALEK SFELGKILEA 60 GRKKELAGAL GLHPRQIAIX RAKWKTTQLE KDFGALKQNY ESLKARYHTL LEENKKLQPE 120 IQRLHSILKN DQNKKDKEIM GDGQIDFNIV IEKKEECYGA HNTQDNIPHQ ASMEENCGRN 180 VLLALREEDC YYNMGEISGF MLVDHWTPSF H

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118007	2e-92	BT118007.1 Picea glauca clone GQ04001_B17 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027363901.1	8e-25	homeobox-leucine zipper protein ATHB-6-like
Swissprot	Q00466	3e-23	HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBL	A0A0D6R0Y6	2e-28	A0A0D6R0Y6_ARACU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-25	HD-ZIP family protein