PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_445236g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 234aa MW: 25881.1 Da PI: 6.3882

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_445236g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.8	5.1e-40	76	175	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck++r+kC+++Cvlapyfp+++p kf vhk+FG+ +v+k l++lp e+r da++s+vyeA r+rdPv+G++gvi++lq+++ +l+ +la MA_445236g0010 76 PCAGCKIQRKKCTENCVLAPYFPQSDPDKFLLVHKVFGNGHVIKSLQELPAEQRGDAVNSMVYEASQRIRDPVHGCAGVINDLQNKITELQLQLA 170 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e MA_445236g0010 171 STQAE 175 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.200	4.9E-4	20	80	IPR000209	Peptidase S8/S53 domain
PROSITE pattern	PS00138	0	27	37	IPR023828	Peptidase S8, subtilisin, Ser-active site
PROSITE profile	PS50891	25.397	75	176	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-38	76	173	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0004252	Molecular Function	serine-type endopeptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MALRFPSLST TMAGNRFRRN FSEIMAGTSD AAPATAGTVN VLKGQHKLWN QDFQKTANTM 60 VKNMSDNASK PGSMSPCAGC KIQRKKCTEN CVLAPYFPQS DPDKFLLVHK VFGNGHVIKS 120 LQELPAEQRG DAVNSMVYEA SQRIRDPVHG CAGVINDLQN KITELQLQLA STQAELANIN 180 MQHANLFTLV TGSHEASDPN FYCVSPQGSE DTDAQSMVVD EEDHPLQFWE SFWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	69	176	4	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	69	176	4	111	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027347331.1	5e-51	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-49	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	B8LQI9	4e-75	B8LQI9_PICSI; Uncharacterized protein
STRING	Gorai.012G094200.1	4e-50	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-52	LOB domain-containing protein 1