PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_471905g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 294aa    MW: 32722.6 Da    PI: 4.9875
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_471905g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-0828492446
                     HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                     W++Ia +++ gRt++++k++w++
   MA_471905g0010 28 WSLIAGRLP-GRTDNEIKNYWNT 49
                     *********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-10357IPR009057Homeodomain-like
PROSITE profilePS5129413.498955IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-13955IPR009057Homeodomain-like
SMARTSM007172.4E-41353IPR001005SANT/Myb domain
CDDcd001671.91E-71651No hitNo description
PfamPF002494.9E-62749IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTSK EDMILSEWSL IAGRLPGRTD NEIKNYWNTR LNKKMLSVTQ  60
SQHNNRKNLK TRSKSPALKN PVFKTIPVRI KKAVRHREIE RLRGSYGYGC SYLSSDKAFK  120
SCNVKETTNS SKSCCDLLVN DSIIADDSHN IAFAAADNLV EVEAGNCTFP ISSLADERSP  180
HFDYFAGLRE GLLSLNELSS PDCILLSSPV DSGSEVFCRE PATLAAETTE FEVVCFDQSN  240
VQGVNSFTDA VDQGMEDFFN NTEQVDWIHE LDLQKGSPQS LGSLLLESEE EWKG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1122550.0BT112255.1 Picea glauca clone GQ03312_J15 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9115e-80A0A167V911_PICAB; Transcription factor MYB31
TrEMBLA0A1W2KRF46e-80A0A1W2KRF4_PINRA; MYB transcription factor MYB6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-14myb domain protein 3