PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_4766093g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 228aa    MW: 24691.3 Da    PI: 5.7764
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_4766093g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS202.42.7e-62221978300
             GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                      ++a+k fse+sP+ +f+h+taNqa+lea+eg+e++HiiDf+i+ G+QW+++lq+La + +g+p++R+T++gs +++s+ el+ t+++L +fA++
  MA_4766093g0010   2 ISAYKSFSEASPLAQFAHFTANQALLEALEGAEAIHIIDFEIGLGGQWASFLQELAVKLGGAPHVRLTALGS-SASSSLELHLTRDNLCNFAKQ 94 
                      899*********************************************************************.6679***************** PP

             GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.......sFlerfl 258
                      l+vpfef++l     +  ++e+L ++++Ea+aVnl+l   ++  ++ s    ++++++l+k+l P+ +vvv+ e+  +++       sF+++fl
  MA_4766093g0010  95 LNVPFEFELL-----HLDHIESLTLREREAVAVNLSLLPSTFT-SPDS----IPRLIRLIKNLAPRAIVVVDAETTATAAaattsaaSFVHHFL 178
                      ********97.....45566999**************444443.4444....556*******************5544333445555******* PP

             GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                      eal++ys lfdsl+a    + ++ +k+E++ll+++i   ++ 
  MA_4766093g0010 179 EALQFYSFLFDSLDAV-NITMDAVHKIEKFLLAPKIDATISS 219
                      *************776.5799***************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.3371228IPR005202Transcription factor GRAS
PfamPF035149.5E-602219IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
KISAYKSFSE ASPLAQFAHF TANQALLEAL EGAEAIHIID FEIGLGGQWA SFLQELAVKL  60
GGAPHVRLTA LGSSASSSLE LHLTRDNLCN FAKQLNVPFE FELLHLDHIE SLTLREREAV  120
AVNLSLLPST FTSPDSIPRL IRLIKNLAPR AIVVVDAETT ATAAAATTSA ASFVHHFLEA  180
LQFYSFLFDS LDAVNITMDA VHKIEKFLLA PKIDATISSA AAPPWKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-38221396300Protein SCARECROW
5b3h_A4e-38221395299Protein SCARECROW
5b3h_D4e-38221395299Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1027430.0BT102743.1 Picea glauca clone GQ02013_I17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258971.12e-63PREDICTED: scarecrow-like protein 6
TrEMBLT1PZF31e-131T1PZF3_9SPER; Scarecrow-like 6
STRINGXP_010258971.18e-63(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-37GRAS family protein