PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_4774g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TCP

Protein Properties

Length: 557aa MW: 60521.1 Da PI: 8.46

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_4774g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.4	6.4e-31	80	211	2	130
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaaksk 98 +g+kdrhsk+ T++g+RdRRvRls+++a++++dLq++LG+d++sk++ WL+++a+ ai+el+ ++ + s++ ++ + ++sn s+++++ ++ ++ MA_4774g0010 80 TGGKDRHSKVITAKGLRDRRVRLSVPTAIQLYDLQERLGYDQPSKAVGWLIKAAESAIDELPVLNPEMDSASADNVAQLNSSNCSNADHCVGSPRES 176 689*************************************************************333333333333333333333334444443222 PP TCP 99 ksqksaasalnlak.esrakarar..arertrekm 130 + +++ ++ +aka+ r + +re m MA_4774g0010 177 ATAVTGSAFTAFRVgLGSAKAQGRnsHKAINREPM 211 22222222222222222233333311222344444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-28	81	204	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.446	82	140	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MVSNSSQDLE AWFIKVNNRE PEMEIQNKDL AAFSESMNKG RLQEDSDKTQ GNGKGSKRKA 60 WKMEGKVEQE WKIVSVSRLT GGKDRHSKVI TAKGLRDRRV RLSVPTAIQL YDLQERLGYD 120 QPSKAVGWLI KAAESAIDEL PVLNPEMDSA SADNVAQLNS SNCSNADHCV GSPRESATAV 180 TGSAFTAFRV GLGSAKAQGR NSHKAINREP MSIATLRGSD LGRSSSSISD GSIKGSAEHT 240 SNCSVSEPLR GSDLGRSSSS ISDGSIKGSA EHTSNCSVSE PTSRIEARLK ASELATKKSV 300 SAKNSGGGSP PAIDQLNSMQ PFLTSYMLKS IFPDTPLLFE SKFSKDNNPC GIHTQILSGT 360 DNVQQLWDYN SRPSYTDMLC TRDSHQLQDL ASSSTAPLQK SFPRVPSTPG SHIGNSCLQS 420 YEMADSAISF FDPKQSRPFG GNAEQGQANL SYSNFPNMIT KRVEQQRQQQ AQMHIKHYAS 480 TIVPTFSNDI NFLTSSLSSR EPHQSISSSI TNMPSLSHTH KNAYGEASAN AAHDFVPSQD 540 YEARVFPGFQ YAGQRKA

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MVSNSSQDLE AWFIKVNNRE PEMEIQNKDL AAFSESMNKG RLQEDSDKTQ GNGKGSKRKA  60
WKMEGKVEQE WKIVSVSRLT GGKDRHSKVI TAKGLRDRRV RLSVPTAIQL YDLQERLGYD  120
QPSKAVGWLI KAAESAIDEL PVLNPEMDSA SADNVAQLNS SNCSNADHCV GSPRESATAV  180
TGSAFTAFRV GLGSAKAQGR NSHKAINREP MSIATLRGSD LGRSSSSISD GSIKGSAEHT  240
SNCSVSEPLR GSDLGRSSSS ISDGSIKGSA EHTSNCSVSE PTSRIEARLK ASELATKKSV  300
SAKNSGGGSP PAIDQLNSMQ PFLTSYMLKS IFPDTPLLFE SKFSKDNNPC GIHTQILSGT  360
DNVQQLWDYN SRPSYTDMLC TRDSHQLQDL ASSSTAPLQK SFPRVPSTPG SHIGNSCLQS  420
YEMADSAISF FDPKQSRPFG GNAEQGQANL SYSNFPNMIT KRVEQQRQQQ AQMHIKHYAS  480
TIVPTFSNDI NFLTSSLSSR EPHQSISSSI TNMPSLSHTH KNAYGEASAN AAHDFVPSQD  540
YEARVFPGFQ YAGQRKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-21	87	141	1	55	Putative transcription factor PCF6
5zkt_B	3e-21	87	141	1	55	Putative transcription factor PCF6

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118606	0.0	BT118606.1 Picea glauca clone GQ04008_C12 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	2e-32	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2