PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_47952g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family LFY
Protein Properties Length: 210aa    MW: 23693.8 Da    PI: 5.0004
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_47952g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY173.81.5e-5311701157
        FLO_LFY   1 mdpeafsaslfkwdpraaa..aapparlleeaavseapleaaaaaaark.lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmksl 93 
                    md+e+f++ +f+wd+r+a   aap+a+ +  ++ + +ple    ++ rk l++le+lf++yGvry+t+ak++e+Gft++tLv+m++ee++dlmk+l
  MA_47952g0010   1 MDAEHFPVGFFRWDQRPAPaaAAPAATTTVFNKDHGRPLEIILPMNGRKeLKSLEDLFREYGVRYSTLAKMTEMGFTANTLVNMTEEEIEDLMKTL 96 
                    9*************777662233333333333445677888999998888********************************************** PP

        FLO_LFY  94 seifrldllvGeryGikaavraerrrlee..........eeaekkrrkllsedeetaldalsqeglseepvqe..e 157
                    +ei+++dll+GeryGik+a+rae++rl++          +e  ++r+++l++d++t   a+++eg+s+e +++   
  MA_47952g0010  97 VEIYHMDLLIGERYGIKSAIRAEKKRLQDclemqrleilSE--AERKRILHDDQNTFAAAMTSEGTSKELRANdpL 170
                    **********************************9997544..55555799******************9887432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.5E-381150IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDAEHFPVGF FRWDQRPAPA AAAPAATTTV FNKDHGRPLE IILPMNGRKE LKSLEDLFRE  60
YGVRYSTLAK MTEMGFTANT LVNMTEEEIE DLMKTLVEIY HMDLLIGERY GIKSAIRAEK  120
KRLQDCLEMQ RLEILSEAER KRILHDDQNT FAAAMTSEGT SKELRANDPL IFPESTSADH  180
APMNIASCKD STLILQNSNQ AQFCGSGLMX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ude_A1e-3847142498GINLFY PROTEIN
4ude_B1e-3847142498GINLFY PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1186340.0BT118634.1 Picea glauca clone GQ04008_F24 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002966714.21e-30floricaula/leafy-like protein FL1
RefseqXP_002978027.11e-30floricaula/leafy-like protein FL1
SwissprotO044071e-134NEED_PINRA; Floricaula/leafy-like protein FL1
TrEMBLA0A455R0N41e-134A0A455R0N4_9SPER; NEEDLY-like protein
STRINGEFJ206845e-30(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1926622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.19e-20floral meristem identity control protein LEAFY (LFY)