PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_479649g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 153aa MW: 16053.9 Da PI: 7.5064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_479649g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	33	49	7	21
T..EEESSHHHHHHHHH CS zf-C2H2 7 g..ksFsrksnLkrHir 21 + ++Fsrk+nL rHi MA_479649g0020 33 SsgTTFSRKDNLFRHIT 49 4559***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MYTCNRCQNK KFSVVADLKT HEKHCGRDKW LCSSGTTFSR KDNLFRHITI FQGHTPVSSP 60 AEMEGAALQD QVGNNGGAPN TGNSVSGFAN ACGNVSGILA GPEVVGLIHS NSNVPSIGPG 120 VNGTVLESSN GAVHSQIGLK NIGFSEDDKN LLL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104095	0.0	BT104095.1 Picea glauca clone GQ02806_G04 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0A9JGB1	1e-27	A0A0A9JGB1_ARUDO; Uncharacterized protein
TrEMBL	A0A0A9S670	1e-27	A0A0A9S670_ARUDO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP830	16	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	9e-29	C2H2 family protein