PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_4929994g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 214aa    MW: 23543.1 Da    PI: 6.9505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_4929994g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-18124175256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +y GVr+++ +g+++AeIrdp++ g  +r++lg+f  aeeAa a+++a+ +l+g+
  MA_4929994g0010 124 HYIGVRQRP-WGKFAAEIRDPVKKG--ARIWLGTFNIAEEAALAYDRAAYRLRGA 175
                      699******.**********76643..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-29123182IPR001471AP2/ERF domain
PROSITE profilePS5103222.51124182IPR001471AP2/ERF domain
PfamPF008471.6E-12124174IPR001471AP2/ERF domain
SMARTSM003805.2E-32124188IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21124183IPR016177DNA-binding domain
CDDcd000182.69E-28124182No hitNo description
PRINTSPR003677.5E-9125136IPR001471AP2/ERF domain
PRINTSPR003677.5E-9148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDVAGGVSTR MNTNINMLEL IRHHLLEVED EDDIDNEGSK SSNGGSVYIN IHDDDNIQAN  60
ATATRGLCQN SSSRITSEDN ENEFTLENSS SSLCSVIRRT ELFKVKPQPR DQENGKTEQI  120
SARHYIGVRQ RPWGKFAAEI RDPVKKGARI WLGTFNIAEE AALAYDRAAY RLRGARALVN  180
FPLALASNPE NGSAVGRKRK RGNSGSGAAG WPLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-31123183464ATERF1
3gcc_A4e-31123183464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195201GRKRKRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA35e-69A9NMA3_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-19ethylene responsive element binding factor 2