PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_502153g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 231aa    MW: 25653.9 Da    PI: 9.6517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_502153g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.3e-213383155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  MA_502153g0010 33 THFRGVRKRP-WGRFAAEIRDpWK----KTRLWLGTFDTAEEAARAYDNAARNLRG 83
                    589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-293390No hitNo description
PfamPF008471.1E-133383IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-213491IPR016177DNA-binding domain
SMARTSM003805.3E-353497IPR001471AP2/ERF domain
PROSITE profilePS5103222.4713491IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-313491IPR001471AP2/ERF domain
PRINTSPR003677.6E-113546IPR001471AP2/ERF domain
PRINTSPR003677.6E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MAVDTMQMAR VGMKMEIGVG DCEETASYAV KGTHFRGVRK RPWGRFAAEI RDPWKKTRLW  60
LGTFDTAEEA ARAYDNAARN LRGPKAKTNF VLQGDSTNSA ILFNNGVTRA INVQRQEWPV  120
FHSKQEPSRQ EWPVFHSKQE PSVSSNSCAA PTALASRLDN DRVSSCGASQ SLAVENQTPP  180
TKKQKLLFGT HLFESSHISQ LREDAVACRS SRRQAPLLLD LNLPPAANDV D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-213196268ATERF1
3gcc_A2e-213196268ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1139880.0BT113988.1 Picea glauca clone GQ03505_O03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.12e-38PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLE0ZH201e-100E0ZH20_PICSI; Ethylene-responsive element binding factor-like protein
STRINGXP_010278126.16e-38(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-25erf domain protein 9