PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_52027g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

SBP

Protein Properties

Length: 1002aa MW: 111895 Da PI: 7.6899

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_52027g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.8e-40	140	216	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv++C+ dl++ak+yhrrhkvCe hska+++lv ++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+qa MA_52027g0010 140 CQVDDCRIDLTNAKDYHRRHKVCEPHSKASTALVGTVMQRFCQQCSRFHPLGEFDEGKRSCRRRLAGHNKRRRKTQA 216 **************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.1E-33	135	201	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.607	137	214	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.72E-37	138	218	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.4E-30	140	213	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	1.3E-7	847	951	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	9.17E-8	848	952	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.49E-8	848	952	No hit	No description
PROSITE profile	PS50297	8.72	886	958	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1002 aa Download sequence Send to blast
MENEAGPRVA YFSHPFPPGG FAQQKHGGTY RHQARNAGWN ADSWEWDSLR FVAKPADEKS 60 HGREGSNVQN AEASSRILHL GTHDSTNMRP ENNKRKYSSE EEDAGNLTLK LGGSLYGDDS 120 NSKTNKRFRS GFVSSSYPLC QVDDCRIDLT NAKDYHRRHK VCEPHSKAST ALVGTVMQRF 180 CQQCSRFHPL GEFDEGKRSC RRRLAGHNKR RRKTQAEEIG CRGFMTGDEN GALRNFDIAS 240 LVAVLSHQHQ ASNSVDKLFD RRSLDKEHLI RCLSKLKSVP SLGDIGTTRP QLAIDLNVSQ 300 NMQPQAQAQD AKGKALQTND RQSPVPDSEM LRILSTLTER SPEALSLLQR SLMAQKTLNS 360 HNSYDQQTIS QQFLNISPTL IASRDIDHVA ISDGHENISK NSLSRGNLAW PVHHFNSSDG 420 MHNPNLVVSK QYFKEDSCNP LEERFSSRSP SLSPPVVQKL FPLHSKDENK EIDSVSVCEE 480 DELTPDQSPK DDGLCKFGLS NSGRRNDRHN ISLSSPPAAS DLRINGYTSS GSDQSPTSSN 540 SDTKERTSRI IFKLFGKDPS DFPQTLRTQI LEWLSHCPSD MESYIRPGCV ILTIFASMPM 600 AAWEQASKRG LARTDGKIRF CRSSSSLDAP EICSVWPIAV VAGEETRLVL RGHNLTTPGT 660 KILCAYRGKY ISQNVPEDYQ VGSSAFFSNA TTIEHKFPGG PANVFGRFFM EVERGFKGNN 720 FPVIVADSAI CRELRTLEGE FEGICEGKVI DWHSKPHSRE DVVFGIQEDV VTFLNELGWL 780 FQRNSYLKEG LFSPKDAPAR FKFLLTYAVE RNWNSLLKKV LDILFIMYGE EEGSVREAFS 840 ILSEIDLLHR AVKRNCRQVV DMLLCYVPSS SADRNIAFRP DVIGPGGLTP LHLAASMQNA 900 EDVVDALTND PQKIGLQAWT TALDANQQTP HAYALMRNNH TYNRLVLEKM ADQRRAQAGP 960 WNLDVTGFLP GTLQNIKVPP AFIASLSGAQ GLLEIEKRPN QI

Sequence ? help Back to Top

Protein Sequence Length: 1002 aa Download sequence Send to blast

MENEAGPRVA YFSHPFPPGG FAQQKHGGTY RHQARNAGWN ADSWEWDSLR FVAKPADEKS  60
HGREGSNVQN AEASSRILHL GTHDSTNMRP ENNKRKYSSE EEDAGNLTLK LGGSLYGDDS  120
NSKTNKRFRS GFVSSSYPLC QVDDCRIDLT NAKDYHRRHK VCEPHSKAST ALVGTVMQRF  180
CQQCSRFHPL GEFDEGKRSC RRRLAGHNKR RRKTQAEEIG CRGFMTGDEN GALRNFDIAS  240
LVAVLSHQHQ ASNSVDKLFD RRSLDKEHLI RCLSKLKSVP SLGDIGTTRP QLAIDLNVSQ  300
NMQPQAQAQD AKGKALQTND RQSPVPDSEM LRILSTLTER SPEALSLLQR SLMAQKTLNS  360
HNSYDQQTIS QQFLNISPTL IASRDIDHVA ISDGHENISK NSLSRGNLAW PVHHFNSSDG  420
MHNPNLVVSK QYFKEDSCNP LEERFSSRSP SLSPPVVQKL FPLHSKDENK EIDSVSVCEE  480
DELTPDQSPK DDGLCKFGLS NSGRRNDRHN ISLSSPPAAS DLRINGYTSS GSDQSPTSSN  540
SDTKERTSRI IFKLFGKDPS DFPQTLRTQI LEWLSHCPSD MESYIRPGCV ILTIFASMPM  600
AAWEQASKRG LARTDGKIRF CRSSSSLDAP EICSVWPIAV VAGEETRLVL RGHNLTTPGT  660
KILCAYRGKY ISQNVPEDYQ VGSSAFFSNA TTIEHKFPGG PANVFGRFFM EVERGFKGNN  720
FPVIVADSAI CRELRTLEGE FEGICEGKVI DWHSKPHSRE DVVFGIQEDV VTFLNELGWL  780
FQRNSYLKEG LFSPKDAPAR FKFLLTYAVE RNWNSLLKKV LDILFIMYGE EEGSVREAFS  840
ILSEIDLLHR AVKRNCRQVV DMLLCYVPSS SADRNIAFRP DVIGPGGLTP LHLAASMQNA  900
EDVVDALTND PQKIGLQAWT TALDANQQTP HAYALMRNNH TYNRLVLEKM ADQRRAQAGP  960
WNLDVTGFLP GTLQNIKVPP AFIASLSGAQ GLLEIEKRPN QI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	134	213	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104682	1e-155	BT104682.1 Picea glauca clone GQ02813_H16 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9S2R6	0.0	A0A0C9S2R6_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18703_5262 transcribed RNA sequence

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP7138	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-170	squamosa promoter binding protein-like 14