PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_52474g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Dof

Protein Properties

Length: 389aa MW: 42231.2 Da PI: 7.1367

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_52474g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.2e-39	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+a+kcprC+stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+++ MA_52474g0010 66 AEQAQKCPRCESTNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNVPVGGGCRKNKRTK 126 57899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	64	124	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-33	68	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
SYGVIQCVCI VFVCGDAPAA SVIIICVKRA KLEADQNAMQ ERGLKPPDDI MSCSRPLLDR 60 RLKPHAEQAQ KCPRCESTNT KFCYYNNYSL SQPRYFCKTC RRYWTKGGTL RNVPVGGGCR 120 KNKRTKRASD QPVSSQNDAS PSTNTTGCEG PSCPTMEEPS STVPGASTSI YYSIANEGDE 180 LAGYPYARAP LGGCNSNNNT GSLQPSLAPL GSLSSLNALQ SLKSSFPGLD LPSCSRPDQG 240 PLNISDLSCL FEAHHQQQQM NTSSSLPISH VSDVFNPFSL PVDALNSHDH HWRGLVQQQK 300 LGVPLEDGQV NMSPLGENIM EGLRPHQQKL RQNNNAKLED ENIRTSAPPV HWQVPPEGFF 360 EAGGDSGYWN GGGTWPDLSG YGPSSSPLI

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

SYGVIQCVCI VFVCGDAPAA SVIIICVKRA KLEADQNAMQ ERGLKPPDDI MSCSRPLLDR  60
RLKPHAEQAQ KCPRCESTNT KFCYYNNYSL SQPRYFCKTC RRYWTKGGTL RNVPVGGGCR  120
KNKRTKRASD QPVSSQNDAS PSTNTTGCEG PSCPTMEEPS STVPGASTSI YYSIANEGDE  180
LAGYPYARAP LGGCNSNNNT GSLQPSLAPL GSLSSLNALQ SLKSSFPGLD LPSCSRPDQG  240
PLNISDLSCL FEAHHQQQQM NTSSSLPISH VSDVFNPFSL PVDALNSHDH HWRGLVQQQK  300
LGVPLEDGQV NMSPLGENIM EGLRPHQQKL RQNNNAKLED ENIRTSAPPV HWQVPPEGFF  360
EAGGDSGYWN GGGTWPDLSG YGPSSSPLI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT116107	1e-175	BT116107.1 Picea glauca clone GQ03711_P05 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6QVB3	1e-161	A0A0D6QVB3_ARACU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-34	TARGET OF MONOPTEROS 6