PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_52914g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 1075aa MW: 121952 Da PI: 5.3457

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_52914g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.6	1.6e-14	270	318	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r+rWT eE+e l +a++++G+g+Wk I ++ + k+R+ q+k+++++ MA_52914g0010 270 RKRWTVEEEEALRRAIHRFGPGNWKEIKEHEPlfKNRSTVQIKDKYRQM 318 89********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00085	0.00183	121	159	No hit	No description
PROSITE profile	PS51294	13.479	267	323	IPR017930	Myb domain
SMART	SM00717	4.2E-12	269	321	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-13	269	318	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-12	270	318	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.37E-12	270	320	IPR009057	Homeodomain-like
CDD	cd11660	1.67E-17	271	319	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence Send to blast
MFAKQVLTDE ERKVDPELGY PRGYAKLCRN AHIQMRGLIT PYTEGPPQRF IPYTLQPEDM 60 AKMKEFNELF PITESEERDP SSARRYADCL WKQLDHLGNA GFDPAKFRID PYGNVLYINA 120 DPASPLAWEV DHWFPHSRGG KTVPSNLRLV QWQVNQRKQN KLEFLVPWWD LQLGVSVNQF 180 LSIFASKNSD FRQRAYSLFF FAGENEPLNE VLVADCHSWP SSFRERKSQF GLAPAAIVIV 240 QKQADESLKF LSGNRPTNSA WPVPSGTPSR KRWTVEEEEA LRRAIHRFGP GNWKEIKEHE 300 PLFKNRSTVQ IKDKYRQMKG DWELEKENRA DDLSDKELSL SRAVQKENRL KKIREHEIQV 360 KEEEIVHLDK ELKELREQNE AERLALEDLD SILIKHKRRV EKQRRWSETQ SSYRMCLEKM 420 IRDAMHQSIV YKEQGRLNQA ACNALMAKLE TQKATCDASE MELIKKIKQR EDLELLLHPC 480 MEQAKKGLHD DDTSSCSKQI IKIELEEVPT CYPPDIGCAH FANVAAADVK EAPDTVVKHK 540 ETFLPLLESK EEYSTGLRKE LRLFPKEEQA ESKANMCLIA PKEQCRAEME IVQNGPALSV 600 ANLGKKVAVK EKSRLSEAEE SDLDVLIVGY EYEGARARAR EAESVGENVT IATLSDFKQS 660 KFEDWPKEDC ASMVGENNTL SKQSRVAKED RACKPLEDDQ LDKMFGDELA MQGQAEAVIA 720 DTITGEENYD EDDRIEMAGQ SSLDKWLQTS LLNPPQVGED SEPKNNKLTA THDDVTATQV 780 DDSNKLASRS PHLKKTPSFG GSEEKKDATE TTLTMAGVPM LPYSTETAAN TLELVEKFQS 840 LQLACNVEGH EEIQTKADGI PKTMNTDAEL SKKGNEIAIK ENPREEMENE NQAMTTSPAV 900 GNVDEMFEHG VKKILHQQEE ELNNFDQIKV QQTVGRIPMK GDLYYMPELK ESEGSISGDC 960 LQEKERECRL QRSESHRVCS NAYNATASFS GVRRTGGESK GKNVVFGEVV QSGENRELDE 1020 TKRAGDEDGH GHGHQGVMLL KNGLNASIKT CTHVWRKAIK RLEGVAIGTD HNRSV

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence Send to blast

MFAKQVLTDE ERKVDPELGY PRGYAKLCRN AHIQMRGLIT PYTEGPPQRF IPYTLQPEDM  60
AKMKEFNELF PITESEERDP SSARRYADCL WKQLDHLGNA GFDPAKFRID PYGNVLYINA  120
DPASPLAWEV DHWFPHSRGG KTVPSNLRLV QWQVNQRKQN KLEFLVPWWD LQLGVSVNQF  180
LSIFASKNSD FRQRAYSLFF FAGENEPLNE VLVADCHSWP SSFRERKSQF GLAPAAIVIV  240
QKQADESLKF LSGNRPTNSA WPVPSGTPSR KRWTVEEEEA LRRAIHRFGP GNWKEIKEHE  300
PLFKNRSTVQ IKDKYRQMKG DWELEKENRA DDLSDKELSL SRAVQKENRL KKIREHEIQV  360
KEEEIVHLDK ELKELREQNE AERLALEDLD SILIKHKRRV EKQRRWSETQ SSYRMCLEKM  420
IRDAMHQSIV YKEQGRLNQA ACNALMAKLE TQKATCDASE MELIKKIKQR EDLELLLHPC  480
MEQAKKGLHD DDTSSCSKQI IKIELEEVPT CYPPDIGCAH FANVAAADVK EAPDTVVKHK  540
ETFLPLLESK EEYSTGLRKE LRLFPKEEQA ESKANMCLIA PKEQCRAEME IVQNGPALSV  600
ANLGKKVAVK EKSRLSEAEE SDLDVLIVGY EYEGARARAR EAESVGENVT IATLSDFKQS  660
KFEDWPKEDC ASMVGENNTL SKQSRVAKED RACKPLEDDQ LDKMFGDELA MQGQAEAVIA  720
DTITGEENYD EDDRIEMAGQ SSLDKWLQTS LLNPPQVGED SEPKNNKLTA THDDVTATQV  780
DDSNKLASRS PHLKKTPSFG GSEEKKDATE TTLTMAGVPM LPYSTETAAN TLELVEKFQS  840
LQLACNVEGH EEIQTKADGI PKTMNTDAEL SKKGNEIAIK ENPREEMENE NQAMTTSPAV  900
GNVDEMFEHG VKKILHQQEE ELNNFDQIKV QQTVGRIPMK GDLYYMPELK ESEGSISGDC  960
LQEKERECRL QRSESHRVCS NAYNATASFS GVRRTGGESK GKNVVFGEVV QSGENRELDE  1020
TKRAGDEDGH GHGHQGVMLL KNGLNASIKT CTHVWRKAIK RLEGVAIGTD HNRSV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106266	0.0	BT106266.1 Picea glauca clone GQ02906_D15 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2877	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	3e-07	myb domain protein 3r-4