PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_53004g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family EIL
Protein Properties Length: 643aa    MW: 72358.2 Da    PI: 5.6277
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_53004g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3484.18.2e-148464321353
                    XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
           EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWk 96 
                    +el+k+mwkd+++l+r+ke++k ++    +  +++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+LraWWk
  MA_53004g0010  46 DELEKQMWKDRIRLRRIKEQRKGKY----H-SDTAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWK 136
                    79********************987....2.467799*********************************************************** PP

                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--. CS
           EIN3  97 ekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgt 192
                    ekv+fdrngpaai+kyqa+++ ++ ++s+ +    ++h+l+elqDTtlgSLLsalmqhcdppqrr+plekg++pPWWPt +e+ww++lgl+k qg+
  MA_53004g0010 137 EKVRFDRNGPAAIAKYQAEHATPGANESNMV-VAPTPHTLQELQDTTLGSLLSALMQHCDPPQRRYPLEKGISPPWWPTTNEDWWPQLGLPKGQGP 231
                    **********************998877755.9*************************************************************** PP

                    -----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX...XXXXXXXXXXXXXXXXXX CS
           EIN3 193 ppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss...slrkqspkvtlsceqked 283
                    ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+v+nqee+++++  ++  ++     ++++ ++t+s+++++d
  MA_53004g0010 232 PPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAVVNQEEALARQKNPNacPPisaAESTHAGSMTFSSSSEYD 327
                    *******************************************************************999976335434444999*********** PP

                    XX.XXXXXX.XXXXXXXXXX......................................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXX CS
           EIN3 284 ve.gkkeskikhvqavktta......................................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsete 340
                    ve  +++++ +   +++ ++                                      +++++rkrk  p+e+   ++++ ++tc ++q++++e +
  MA_53004g0010 328 VEgFEDDPN-SIYTNNDVQDckpqdldllnsevqeckpqefdhfnigisnegvsalqdNVDFIRKRK-LPQEPPL-EDQK-VYTCPHEQCPYHERQ 419
                    **7333333.322222222245666*****************************************9.5555555.5554.6************** PP

                    XXXXXXXXXXXXX CS
           EIN3 341 lifadknsisqne 353
                    l+f+d++ +++++
  MA_53004g0010 420 LGFSDQSLRNSHQ 432
                    **********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.1E-12846293No hitNo description
Gene3DG3DSA:1.10.3180.101.9E-74167302IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.09E-61172297IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MGIYDEMGYP GNLDLLSVPL EGDSMCENEG EVMHDEGLSE DDIDVDELEK QMWKDRIRLR  60
RIKEQRKGKY HSDTAKQRQS QEQARRKKMS RAQDGILKYM LKMMEVCKAQ GFVYGIIPEK  120
GKPVSGASDN LRAWWKEKVR FDRNGPAAIA KYQAEHATPG ANESNMVVAP TPHTLQELQD  180
TTLGSLLSAL MQHCDPPQRR YPLEKGISPP WWPTTNEDWW PQLGLPKGQG PPPYKKPHDL  240
KKAWKVGVLT AVIKHMSPDI AKIRKLVRQS KCLQDKMTAK ESATWLAVVN QEEALARQKN  300
PNACPPISAA ESTHAGSMTF SSSSEYDVEG FEDDPNSIYT NNDVQDCKPQ DLDLLNSEVQ  360
ECKPQEFDHF NIGISNEGVS ALQDNVDFIR KRKLPQEPPL EDQKVYTCPH EQCPYHERQL  420
GFSDQSLRNS HQSTCAYRTD LQGMGYQRPE PQESKSLFCI STGQPNQLQV QGKVSMFPSE  480
KEGQTTSNGN VNLNPLSTTG SAILTSNQQP INELLALYDG LHQNKTATLG NLKMMNDHSQ  540
LEVNMHPASQ GGEIFKITPD DNLFGQGVVA GNNGNNFGSN MQLVMREGLN LDQSRVYDQP  600
FIHHCQEMNG DMKFVSAYNN ISIDYAVPET VSKYDNSIWY FGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-791713032134Protein ETHYLENE INSENSITIVE 3
4zds_B4e-791713032134Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1188900.0BT118890.1 Picea glauca clone GQ04011_I03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020517603.10.0LOW QUALITY PROTEIN: ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ9SLH00.0EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLA0A0C9RQ590.0A0A0C9RQ59_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_3637_3249 transcribed RNA sequence
STRINGVIT_13s0047g00250.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-172ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  4. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  5. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  6. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  7. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  8. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]