PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_54954g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 190aa MW: 21801.2 Da PI: 7.1254

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_54954g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.8	4.7e-28	110	167	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYG+K k+s++pr+YYrC+ +C vkk ver+a+d+ +v++tY g+Hnhe MA_54954g0010 110 QDGYKWRKYGRKYLKNSPNPRNYYRCSNISCDVKKTVERDAHDKGLVITTYVGKHNHE 167 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.8E-30	99	169	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	101	169	IPR003657	WRKY domain
PROSITE profile	PS50811	29.528	104	169	IPR003657	WRKY domain
SMART	SM00774	2.5E-28	109	168	IPR003657	WRKY domain
Pfam	PF03106	1.8E-21	110	167	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MNEGAEAFEI SDFLVLEEEF DNSCKTEDAG DQSYNFNSVN SGPSIQLDYG RSFPSNRPWI 60 QGIHSDQNST VIQTDEPPET MNPKKISRKR KAEGALKYAF LTRSETDILQ DGYKWRKYGR 120 KYLKNSPNPR NYYRCSNISC DVKKTVERDA HDKGLVITTY VGKHNHESPT VIYYIGRHEM 180 HQASAAMPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-23	102	169	7	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113446	0.0	BT113446.1 Picea glauca clone GQ03408_M17 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q93WU9	3e-27	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A0D6R4C9	5e-47	A0A0D6R4C9_ARACU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-29	WRKY DNA-binding protein 51

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]