PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_55226g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 187aa    MW: 21191.6 Da    PI: 5.3584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_55226g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.7e-152369254
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                   ++kG+r +kk+g+W++eIr       + r++lg+++t+e+Aa+a++ a  +l+
  MA_55226g0020 23 QFKGIR-RKKWGKWASEIRNS-----KDRIWLGSYDTPEKAARAYDFAVYCLR 69
                   69***9.556**********4.....5*******************8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-242279IPR001471AP2/ERF domain
SMARTSM003802.3E-272384IPR001471AP2/ERF domain
PROSITE profilePS5103220.5742378IPR001471AP2/ERF domain
CDDcd000181.60E-232380No hitNo description
SuperFamilySSF541714.45E-182380IPR016177DNA-binding domain
PfamPF008473.7E-92467IPR001471AP2/ERF domain
PRINTSPR003671.8E-82435IPR001471AP2/ERF domain
PRINTSPR003671.8E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAKPSSNHIS HSRPKNRSLE SRQFKGIRRK KWGKWASEIR NSKDRIWLGS YDTPEKAARA  60
YDFAVYCLRV SKANFNFPYS PPEIPYASSL SKQQIKAATA KFAAEEIRPP SEANTTFSSS  120
CSKAESNISV EQVSAFWDLV LESSIEGQEI SVEQDPAFWD LVLEDLDSCD SITFEDFPPI  180
DDFLHIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1620791173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022147536.11e-34ethylene-responsive transcription factor ERF017
TrEMBLB8LPP62e-66B8LPP6_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-33ERF family protein