PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_55512g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 98aa MW: 11088.5 Da PI: 4.4316

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_55512g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	32	3.4e-10	2	40	62	100
DUF260 62 vyeAearardPvyGavgvilklqqqleqlkaelallkee 100 v +A+ r+rdPvyG+vgvi++l++++++l+++la++++e MA_55512g0010 2 VHQARERIRDPVYGCVGVINDLKNKVSELQSQLASTQAE 40 789*******************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	8.626	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-8	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MVHQARERIR DPVYGCVGVI NDLKNKVSEL QSQLASTQAE VASITQQHAN LLTVIFGCHE 60 VLEPNFYIPS LEETEDTHMN APVADDVDPL QLWKPFWT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LQI9	1e-30	B8LQI9_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16263	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-16	LOB domain-containing protein 1