PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_56828g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Dof

Protein Properties

Length: 373aa MW: 41190.6 Da PI: 7.9341

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_56828g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	43	102	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+rknk+++ MA_56828g0010 43 QQTLKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRKNKRTK 102 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	42	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-33	44	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.683	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MDSTDWQQQN GMQERGLKSP DDMMSACSRP LLERRPVKQP TDQQTLKCPR CDSPNTKFCY 60 YNNYSLSQPR HFCKTCRRYW TRGGALRNVP VGGGCRKNKR TKRGGLDIPG GGLTSSNSGN 120 PSSAHDLVTN PFHHTPNGSM YYGLPSSGNE ISLAFARIQQ AARLGDRSAM ANCKNSSDYN 180 LGRNTQSSIP SSHLSALSAL KSSQLSGLEF PIISGRQDQG SEDFCSFLET NPHMPGPINI 240 NPPLTATTSN LNMFTASEDH HGQNNIDSSI RWNRLNDQSR IPLALIHEGH HPDETQALAS 300 NFNGEHHHHT ISKSKVKTEE PENRLVSEWQ IIPGAAASET LFQTAGDNAD YWNGGAWPDL 360 MTSYIRGSPC HHC

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MDSTDWQQQN GMQERGLKSP DDMMSACSRP LLERRPVKQP TDQQTLKCPR CDSPNTKFCY  60
YNNYSLSQPR HFCKTCRRYW TRGGALRNVP VGGGCRKNKR TKRGGLDIPG GGLTSSNSGN  120
PSSAHDLVTN PFHHTPNGSM YYGLPSSGNE ISLAFARIQQ AARLGDRSAM ANCKNSSDYN  180
LGRNTQSSIP SSHLSALSAL KSSQLSGLEF PIISGRQDQG SEDFCSFLET NPHMPGPINI  240
NPPLTATTSN LNMFTASEDH HGQNNIDSSI RWNRLNDQSR IPLALIHEGH HPDETQALAS  300
NFNGEHHHHT ISKSKVKTEE PENRLVSEWQ IIPGAAASET LFQTAGDNAD YWNGGAWPDL  360
MTSYIRGSPC HHC

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC688676	0.0	KC688676.1 Pinus pinaster Dof1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	T2B6N6	0.0	T2B6N6_PINPS; Dof1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-35	Dof family protein