PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_5748192g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 240aa    MW: 27278.8 Da    PI: 9.7489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_5748192g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-241901799
                     E--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 17 vlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                     v+pk++ae+h        ++ ++++ l +ed ++ + W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++++  +++l+++++r 
  MA_5748192g0010  1 VIPKQYAEKHfpldaasIEDRAKGVLLNFEDiSTEKIWRFRYSYWNSSQSYVLTKGWNRFVKEKRLQAGDIVTFERNS-GSRRLFITFRRP 90
                     79***********999844557999******6666****************************************654.777788888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023621.7E-21189IPR003340B3 DNA binding domain
SMARTSM010194.3E-12191IPR003340B3 DNA binding domain
PROSITE profilePS5086314.72191IPR003340B3 DNA binding domain
CDDcd100172.24E-20189No hitNo description
SuperFamilySSF1019367.85E-23189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-28189IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
VIPKQYAEKH FPLDAASIED RAKGVLLNFE DISTEKIWRF RYSYWNSSQS YVLTKGWNRF  60
VKEKRLQAGD IVTFERNSGS RRLFITFRRP SRYLLPHSAP PPPLKRCPLA VNPFTVKGYP  120
HREQFFYTTP PPPEVQNPAA HCSIPWVAGP NSVDFLSTPK SVSDDRKRPS VDFVDQRRSP  180
PSTDGNCDSS SVWLFGVNLQ LSPLNFCSGI TVEEETEHAK RKTTAEAFSG GKRRCDTAVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-34110030127DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019456791.15e-36PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_019456792.15e-36PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_019456793.15e-36PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBLA0A0D6QRH56e-35A0A0D6QRH5_ARACU; Uncharacterized protein
STRINGPavir.J38226.1.p1e-33(Panicum virgatum)
STRINGSb06g026370.12e-33(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1446623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.18e-35B3 family protein