PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_57501g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 466aa    MW: 51913.1 Da    PI: 7.3121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_57501g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043269291123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  MA_57501g0010 269 FSCNYCQRKFYSSQALGGHQNAH 291
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-6266296No hitNo description
PROSITE profilePS5015711.427269296IPR007087Zinc finger, C2H2
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLRWRGGPRI RYLRDLIWLF LGRKVCIALQ TERLLEGVMQ EASRAVVRNL QQAAQLTENA  60
CCLLRPLQMQ VTIAISRLFV LLCHGTIFLK VQGWVASENA DASSHKHMMN IMKNCSIDLE  120
GSESYFSEES VISQQLSASN VSAGLESSLF SQQQHQPHYM FQVQENAPKS REKSSAEDFK  180
LEETSEVSLN LTIGYDGEGG GTVREGKDLQ TSNFIDYFGQ SSNTEEAEKE HDASVDTKGP  240
LESSNEVGHP TTYPESSSLS AQGSEPRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR  300
GQRIGAFQHR YISMASLPLH GSTESATGQI NRSLGIKAHS LIHKSPYAEP SLPLSHHGWS  360
RPPIEQHPAV GKYVMEDMGS SRMIVGNRGG VARFENNNFG AGRVLGANPF LHEEPASFCW  420
PGSFRRMQQQ SQDGGSYHTQ NHETSSNGFY LKPQDDISKL DLSLRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6776680.0EF677668.1 Picea sitchensis clone WS02772_L13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LP970.0B8LP97_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.17e-33zinc-finger protein 1