PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_5767g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ZF-HD

Protein Properties

Length: 225aa MW: 24808.7 Da PI: 9.1532

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_5767g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.2	7.2e-32	90	145	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eC+kNhAa++G+ha+DGCgEfm+s g egta+alkC ACgCHRnFHR+eve MA_5767g0010 90 IVRYRECQKNHAANIGSHALDGCGEFMAS-GLEGTADALKCQACGCHRNFHRQEVEG 145 689***********************9.999******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-19	91	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.8E-29	91	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-28	92	143	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.749	93	142	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.05E-18	150	223	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-31	152	224	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.3E-25	162	219	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MKGNCIVHDT SRDFVRGKDP GFDLARLLSR HIQAAAEPDL SQPHHIVHET GTGNNIHGNN 60 NNAHVGQNGN GDEVKPLVEK SKKADSVEKI VRYRECQKNH AANIGSHALD GCGEFMASGL 120 EGTADALKCQ ACGCHRNFHR QEVEGEGGSG GRGVGSSSSA MKKRFRTKFS QEQKEKMHTF 180 ADQLGWRIQK HDEAAVHQFC NEAGVRRHVL KVWMHNNKNT LGKKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-27	163	220	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF676904	0.0	EF676904.1 Picea sitchensis clone WS02757_J24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024523652.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024523653.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024523654.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024523655.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024523656.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024523658.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024523659.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024523660.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024523661.1	4e-58	zinc-finger homeodomain protein 2
Refseq	XP_024526921.1	3e-58	zinc-finger homeodomain protein 2
Refseq	XP_024526922.1	3e-58	zinc-finger homeodomain protein 2
Refseq	XP_024526923.1	3e-58	zinc-finger homeodomain protein 2
Refseq	XP_024526924.1	3e-58	zinc-finger homeodomain protein 2
Refseq	XP_024526925.1	3e-58	zinc-finger homeodomain protein 2
Refseq	XP_024526926.1	3e-58	zinc-finger homeodomain protein 2
Refseq	XP_024526927.1	3e-58	zinc-finger homeodomain protein 2
Refseq	XP_024543025.1	4e-58	zinc-finger homeodomain protein 2-like
Refseq	XP_024543026.1	4e-58	zinc-finger homeodomain protein 2-like
Refseq	XP_024543027.1	4e-58	zinc-finger homeodomain protein 2-like
Refseq	XP_024543028.1	4e-58	zinc-finger homeodomain protein 2-like
Swissprot	Q9SB61	6e-58	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2R6WRS7	4e-63	A0A2R6WRS7_MARPO; Uncharacterized protein
STRING	XP_010272957.1	7e-57	(Nelumbo nucifera)
STRING	EFJ04587	1e-57	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-54	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]