PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_5979847g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 207aa    MW: 22490.1 Da    PI: 6.3584
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_5979847g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-18454255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +g+++AeIrd +    +  r++lg+f t eeAa a+++a+ +++g
  MA_5979847g0010  4 HYRGVRKRP-WGKYAAEIRDSTR---HgVRVWLGTFETGEEAAMAYDQAAFAMRG 54
                     8********.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-31363IPR001471AP2/ERF domain
CDDcd000181.83E-29362No hitNo description
PROSITE profilePS5103223.051462IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22464IPR016177DNA-binding domain
PfamPF008473.9E-14454IPR001471AP2/ERF domain
SMARTSM003806.4E-37468IPR001471AP2/ERF domain
PRINTSPR003678.7E-11516IPR001471AP2/ERF domain
PRINTSPR003678.7E-112844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
GEKHYRGVRK RPWGKYAAEI RDSTRHGVRV WLGTFETGEE AAMAYDQAAF AMRGSNAILN  60
FPLEVVCSSF KRRQVLPASS VKFSAGGSSE ISSGVTTSGT QLSDCHSRIQ PLDEYHSSTA  120
TSAPERPAAI GLDSCRKRRR PAPSPADKLT TNISDESQNV DKSSGVLLIA EPKSAETHSI  180
LELEALGVDY LEELLLSSQE EASCFLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-31365466ATERF1
3gcc_A6e-31365466ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0711921e-69FJ071192.2 Pinus taeda isolate 1655 anonymous locus 0_3648_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGLYMA15G08560.19e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-25ethylene response factor 1