PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_59896g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WOX
Protein Properties Length: 317aa    MW: 35102.1 Da    PI: 5.1997
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_59896g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.21e-1648108257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    r+R+ +++eq+ +Le+ F++   +p +ee++++ ++l    ++ e+ V++WFqNr+ k k+
  MA_59896g0010  48 RTRWIPKSEQIGILEAIFNSgMVNPPREEIRRIRAQLekfgEVGEASVYYWFQNRKSKVKR 108
                    89*****************99*************************************997 PP
2Wus_type_Homeobox95.44.8e-3147110265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +rtRW P++eQi iLe++++sG+++P++eei+ri+a+Le++G+++++ V+yWFQNrk++ +++q
      MA_59896g0010  47 PRTRWIPKSEQIGILEAIFNSGMVNPPREEIRRIRAQLEKFGEVGEASVYYWFQNRKSKVKRRQ 110
                        689*********************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.46E-1343115IPR009057Homeodomain-like
PROSITE profilePS5007111.32144109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-845113IPR009057Homeodomain-like
SMARTSM003891.1E-846113IPR001356Homeobox domain
CDDcd000863.77E-847110No hitNo description
PfamPF000461.7E-1448108IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MFMKKSSTSP DNPLPEMLNS SAMTLPYSEG ASSHNYVLER ARNPPKPRTR WIPKSEQIGI  60
LEAIFNSGMV NPPREEIRRI RAQLEKFGEV GEASVYYWFQ NRKSKVKRRQ RQLQAVQRSK  120
SNAETGIPSS TSSTASTSTS TSVKSKPMTD LSNSRAANNI QNNIGDQFYS SAELDTSFAG  180
HDYDLQAMYD EMSNYNELSN MQAIGAAHDY DLQAMYDEMA NYNEISNMQA IGTAVAAGGQ  240
GISNEGTGVV QDSVINPNPL ITVFINDNPI QVPMGPINVR AFFGDNVLLF RSSGEFVTVN  300
EWGFTSEGLE HGAKYFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107NRKSKVKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8D15e-89R9R8D1_PICAB; WUSCHEL homeobox protein WOX8B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP46971222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.11e-31WUSCHEL related homeobox 8