PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_608139g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YA

Protein Properties

Length: 194aa MW: 21146.5 Da PI: 7.3235

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_608139g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107.2	1.3e-33	10	66	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF MA_608139g0010 10 DEPVYVNAKQYHGILRRRQSRAKAELENKL-IKVRKPYLHESRHLHAMRRARGCGGRF 66 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-37	8	69	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.68	9	69	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.8E-28	11	66	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.4E-24	12	34	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	14	34	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.4E-24	43	66	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MPLPSDVIED EPVYVNAKQY HGILRRRQSR AKAELENKLI KVRKPYLHES RHLHAMRRAR 60 GCGGRFLNTK LLETTKVNAD SGKLTEGQHA WAVSSSSTEA LQSENGNMNS SEVHGNSGLS 120 GSEVTSMSES CPDGTSYSYT QGNGGYLYHH ASSHFHLLGF SPLSDGSGEV ESGQGMGYGI 180 KWIAAESCCD PMKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-21	10	85	2	76	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT104913	0.0	BT104913.1 Picea glauca clone GQ02816_I15 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247679.1	3e-52	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
Refseq	XP_010247683.1	2e-52	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X2
Refseq	XP_010247690.1	8e-53	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X3
Swissprot	Q84JP1	2e-35	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
Swissprot	Q9LNP6	6e-35	NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBL	A0A0D6QWS4	6e-88	A0A0D6QWS4_ARACU; Uncharacterized protein
STRING	XP_010247679.1	1e-51	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	7e-38	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Djami-Tchatchou AT,Ntushelo K Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum. Pak. J. Biol. Sci., 2017. 20(3): p. 147-153 [PMID:29023006]